2020

Underestimated effect of intragenic HIV-1 DNA methylation on viral transcription in infected individuals
S. Kint, W. Trypsteen, W. De Spiegelaere, E. Malatinková, S. Kinloch-de Loes, T. De Meyer, W. Van Criekinge and L. Vandekerckhove
(2020) CLINICAL EPIGENETICS, 12, 36

Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode
R. Ghaemi, E. Pourjam, N. Safaie, B. Verstraeten, S. Mahmoudi, R. Mehrabi, T. De Meyer and T. Kyndt
(2020) BMC PLANT BIOLOGY, 20, 483

Functional role of Tet-mediated RNA hydroxymethylcytosine in mouse ES cells and during differentiation
J. Lan, N. Rajan, M. Bizet, A. Penning, N. Singh, D. Guallar, E. Calonne, A. Li Greci, E. Bonvin, R. Deplus, P. Hsu, S. Nachtergaele, C. Ma, R. Song, A. Fuentes-Iglesias, B. Hassabi, P. Putmans, F. Mies, G. Menschaert, J. Wong, J. Wang, M. Fidalgo, B. Yuan and F. Fuks
(2020) NATURE COMMUNICATIONS, 11, 4956

2019

Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics
H. Budamgunta, E. Maes, H. Willems, G. Menschaert, K. Schildermans, A. Kumar, K. Boonen and G. Baggerman
(2019) JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 1124,

Beyond genes : re-identifiability of proteomic data and its implications for personalized medicine
K. Boonen, K. Hens, G. Menschaert, G. Baggerman, D. Valkenborg and G. Ertaylan
(2019) GENES, 10, 682

Selection of miRNA reference genes for plant defence studies in rice (Oryza sativa)
B. Verstraeten, L. De Smet, T. Kyndt and T. De Meyer
(2019) PLANTA, 250,

Clinically significant prostate cancer diagnosed using a urinary molecular biomarker-based risk score : two case reports
P. Minnee, D. Hessels, J. Schalken and W. Van Criekinge
(2019) BMC UROLOGY, 19, 124

DeepRibo : a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns
J. Clauwaert, G. Menschaert and W. Waegeman
(2019) NUCLEIC ACIDS RESEARCH, 47, e36

MGMT promoter methylation cutoff with safety margin for selecting glioblastoma patients into trials omitting temozolomide : a pooled analysis of four clinical trials
M. Hegi, E. Genbrugge, T. Gorlia, R. Stupp, M. Gilbert, O. Chinot, L. Nabors, G. Jones, W. Van Criekinge, J. Straub and M. Weller
(2019) CLINICAL CANCER RESEARCH, 25,

Multicenter optimization and validation of a 2-gene mRNA urine test for detection of clinically significant prostate cancer before initial prostate biopsy
A. Haese, G. Trooskens, S. Steyaert, D. Hessels, M. Brawer, V. Vlaeminck-Guillem, A. Ruffion, D. Tilki, J. Schalken, J. Groskopf and W. Van Criekinge
(2019) JOURNAL OF UROLOGY, 202,