Publications by Gerben Menschaert.

2019

PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms
S. Verbruggen, E. Ndah, W. Van Criekinge, S. Gessulat, B. Kuster, M. Wilhelm, G. Menschaert and P. Van Damme
(2019) MOLECULAR & CELLULAR PROTEOMICS, 18,

Proteomics Standards Initiative extended FASTA format
P. Binz, J. Shofstahl, J. Vizcaíno, H. Barsnes, R. Chalkley, G. Menschaert, E. Alpi, K. Clauser, J. Eng, L. Lane, S. Seymour, L. Hernández Sánchez, G. Mayer, M. Eisenacher, Y. Perez-Riverol, E. Kapp, L. Mendoza, P. Baker, A. Collins, T. Van Den Bossche and E. Deutsch
(2019) JOURNAL OF PROTEOME RESEARCH, 18,

A combined strategy of neuropeptide prediction and tandem mass spectrometry identifies evolutionarily conserved ancient neuropeptides in the sea anemone Nematostella vectensis
E. Hayakawa, H. Watanabe, G. Menschaert, T. Holstein, G. Baggerman and L. Schoofs
(2019) PLOS ONE, 14, e0215185

Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics
H. Budamgunta, E. Maes, H. Willems, G. Menschaert, K. Schildermans, A. Kumar, K. Boonen and G. Baggerman
(2019) JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 1124,

Beyond genes : re-identifiability of proteomic data and its implications for personalized medicine
K. Boonen, K. Hens, G. Menschaert, G. Baggerman, D. Valkenborg and G. Ertaylan
(2019) GENES, 10, 682

DeepRibo : a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns
J. Clauwaert, G. Menschaert and W. Waegeman
(2019) NUCLEIC ACIDS RESEARCH, 47, e36