Publications by Gerben Menschaert.

2021

Identification of non-canonical translation products in C. elegans using tandem mass spectrometry
B. Parmar, M. Peeters, K. Boonen, E. Clark, G. Baggerman, G. Menschaert and L. Temmerman
(2021) FRONTIERS IN GENETICS, 12, 728900

Downregulation of the FTO m(6)A RNA demethylase promotes EMT-mediated progression of epithelial tumors and sensitivity to Wnt inhibitors
J. Jeschke, E. Collignon, C. Al Wardi, M. Krayem, M. Bizet, Y. Jia, S. Garaud, Z. Wimana, E. Calonne, B. Hassabi, R. Morandini, R. Deplus, P. Putmans, G. Dube, N. Singh, A. Koch, K. Shostak, L. Rizzotto, R. Ross, C. Desmedt, Y. Bareche, F. Rothe, J. Lehmann-Che, M. Duterque-Coquillaud, X. Leroy, G. Menschaert, L. Teixeira, M. Guo, P. Limbach, P. Close, A. Chariot, E. Leucci, G. Ghanem, B. Yuan, K. Willard-Gallo, C. Sotiriou, J. Marine and F. Fuks
(2021) NATURE CANCER, 2,

Spectral prediction features as a solution for the search space size problem in proteogenomics
S. Verbruggen, S. Gessulat, R. Gabriels, A. Matsaroki, H. Van de Voorde, B. Kuster, S. Degroeve, L. Martens, W. Van Criekinge, M. Wilhelm and G. Menschaert
(2021) MOLECULAR & CELLULAR PROTEOMICS, 20, 100076

Ion mobility coupled to a time-of-flight mass analyzer combined with fragment intensity predictions improves identification of classical bioactive peptides and small open reading frame-encoded peptides
M. Peeters, G. Baggerman, R. Gabriels, E. Pepermans, G. Menschaert and K. Boonen
(2021) FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 9, 720570

Explainability in transformer models for functional genomics
J. Clauwaert, G. Menschaert and W. Waegeman
(2021) BRIEFINGS IN BIOINFORMATICS, 22, bbab060