Publications by Gerben Menschaert.

2020

Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly
S. Zhang, B. Reljić, C. Liang, B. Kerouanton, J. Francisco, J. Peh, C. Mary, N. Jagannathan, V. Olexiouk, C. Tang, G. Fidelito, S. Nama, R. Cheng, C. Wee, L. Wang, P. Duek Roggli, P. Sampath, L. Lane, E. Petretto, R. Sobota, S. Jesuthasan, L. Tucker-Kellogg, B. Reversade, G. Menschaert, L. Sun, D. Stroud and L. Ho
(2020) NATURE COMMUNICATIONS, 11, 1312

The hunt for sORFs : a multidisciplinary strategy
M. Peeters and G. Menschaert
(2020) EXPERIMENTAL CELL RESEARCH, 391, 111923

A methodology for discovering novel brain-relevant peptides : combination of ribosome profiling and peptidomics
R. Tharakan, S. Kreimer, C. Ubaida-Mohien, J. Lavoie, V. Olexiouk, G. Menschaert, N. Ingolia, R. Cole, K. Ishizuka, A. Sawa and L. Nucifora
(2020) NEUROSCIENCE RESEARCH, 151,

2019

DeepRibo : a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns
J. Clauwaert, G. Menschaert and W. Waegeman
(2019) NUCLEIC ACIDS RESEARCH, 47, e36

Beyond genes : re-identifiability of proteomic data and its implications for personalized medicine
K. Boonen, K. Hens, G. Menschaert, G. Baggerman, D. Valkenborg and G. Ertaylan
(2019) GENES, 10, 682

PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms
S. Verbruggen, E. Ndah, W. Van Criekinge, S. Gessulat, B. Kuster, M. Wilhelm, G. Menschaert and P. Van Damme
(2019) MOLECULAR & CELLULAR PROTEOMICS, 18,

Proteomics Standards Initiative extended FASTA format
P. Binz, J. Shofstahl, J. Vizcaíno, H. Barsnes, R. Chalkley, G. Menschaert, E. Alpi, K. Clauser, J. Eng, L. Lane, S. Seymour, L. Hernández Sánchez, G. Mayer, M. Eisenacher, Y. Perez-Riverol, E. Kapp, L. Mendoza, P. Baker, A. Collins, T. Van Den Bossche and E. Deutsch
(2019) JOURNAL OF PROTEOME RESEARCH, 18,

A combined strategy of neuropeptide prediction and tandem mass spectrometry identifies evolutionarily conserved ancient neuropeptides in the sea anemone Nematostella vectensis
E. Hayakawa, H. Watanabe, G. Menschaert, T. Holstein, G. Baggerman and L. Schoofs
(2019) PLOS ONE, 14, e0215185

Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics
H. Budamgunta, E. Maes, H. Willems, G. Menschaert, K. Schildermans, A. Kumar, K. Boonen and G. Baggerman
(2019) JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 1124,

2018

A gene family coding for salivary proteins (SHOT) of the polyphagous spider mite Tetranychus urticae exhibits fast host-dependent transcriptional plasticity
W. Jonckheere, W. Dermauw, M. Khaglighi, N. Pavlidi, W. Reubens, G. Baggerman, L. Tirry, G. Menschaert, M. Kant, B. Vanholme and T. Van Leeuwen
(2018) MOLECULAR PLANT-MICROBE INTERACTIONS, 31,