Publications by Gerben Menschaert.

2018

mQC : a post-mapping data exploration tool for ribosome profiling
S. Verbruggen and G. Menschaert
(2018) COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 181, 104806

Mass spectrometric evidence for neuropeptide-amidating enzymes in Caenorhabditis elegans
S. Van Bael, J. Watteyne, K. Boonen, W. De Haes, G. Menschaert, N. Ringstad, H. Horvitz, L. Schoofs, S. Husson and L. Temmerman
(2018) JOURNAL OF BIOLOGICAL CHEMISTRY, 293,

Deletion 6q drives T-cell leukemia progression by ribosome modulation
S. Gachet, T. El-Chaar, D. Avran, E. Genesca, F. Catez, S. Quentin, M. Delord, G. Thérizols, D. Briot, G. Meunier, L. Hernandez, M. Pla, W. Smits, J. Buijs-Gladdines, W. Van Loocke, G. Menschaert, I. André-Schmutz, T. Taghon, P. Van Vlierberghe, J. Meijerink, A. Baruchel, H. Dombret, E. Clappier, J. Diaz, C. Gazin, H. de Thé, F. Sigaux and J. Soulier
(2018) CANCER DISCOVERY, 8,

Comprehensive peptide analysis of mouse brain striatum identifies novel sORF-encoded polypeptides
H. Budamgunta, V. Olexiouk, W. Luyten, K. Schildermans, E. Maes, K. Boonen, G. Menschaert and G. Baggerman
(2018) PROTEOMICS, 18, 1700218

Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini
C. Na, M. Barbhuiya, M. Kim, S. Verbruggen, S. Eacker, O. Pletnikova, J. Troncoso, M. Halushka, G. Menschaert, C. Overall and A. Pandey
(2018) GENOME RESEARCH, 28,

A gene family coding for salivary proteins (SHOT) of the polyphagous spider mite Tetranychus urticae exhibits fast host-dependent transcriptional plasticity
W. Jonckheere, W. Dermauw, M. Khaglighi, N. Pavlidi, W. Reubens, G. Baggerman, L. Tirry, G. Menschaert, M. Kant, B. Vanholme and T. Van Leeuwen
(2018) MOLECULAR PLANT-MICROBE INTERACTIONS, 31,

An update on sORFs.org : a repository of small ORFs identified by ribosome profiling
V. Olexiouk, W. Van Criekinge and G. Menschaert
(2018) NUCLEIC ACIDS RESEARCH, 46,

2017

Noncoding after all : biases in proteomics data do not explain observed absence of lncRNA translation products
K. Verheggen, P. Volders, P. Mestdagh, G. Menschaert, P. Van Damme, K. Gevaert, L. Martens and J. Vandesompele
(2017) JOURNAL OF PROTEOME RESEARCH, 16,

REPARATION : ribosome profiling assisted (re-)annotation of bacterial genomes
E. Ndah, V. Jonckheere, A. Giess, E. Valen, G. Menschaert and P. Van Damme
(2017) NUCLEIC ACIDS RESEARCH, 45, e168

eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs
D. Fijalkowska, S. Verbruggen, E. Ndah, V. Jonckheere, G. Menschaert and P. Van Damme
(2017) NUCLEIC ACIDS RESEARCH, 45,